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ruchim/gatk:4.0-prerelease-1efafd2b5

Manifest digest

sha256:a85368ae4982a3e3513032f738565de041540b7b4392471f0cab164ecf54c3d2

OS/ARCH

linux/amd64

Compressed size

2.78 GB

Last pushed

almost 9 years by ruchim

Type

Image

Manifest digest

sha256:a85368ae4982a3e3513032f738565de041540b7b4392471f0cab164ecf54c3d2

Image Layers

Image Layers

1ADD file ... in / 45.41 MB
2/bin/sh -c set -xe &&850 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd168 B
6CMD ["/bin/bash"]0 B
7/bin/sh -c apt-get update &&311.75 MB
8/bin/sh -c apt-get install -y12.72 MB
9/bin/sh -c wget https://dl.google.com/dl/cloudsdk/release/google-cloud-sdk.zip 9.02 MB
10/bin/sh -c google-cloud-sdk/install.sh --usage-reporting=true --path-update=true39.81 MB
11VOLUME [/root/.config]0 B
12ENV PATH=/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13/bin/sh -c yes | gcloud1.08 KB
14/bin/sh -c yes | gcloud1.08 KB
15/bin/sh -c apt-get update &&16.44 MB
16ENV HOME=/root0 B
17WORKDIR /root0 B
18CMD ["bash"]0 B
19ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
20ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/0 B
21/bin/sh -c java -version130 B
22/bin/sh -c apt-key adv --keyserver56.62 MB
23COPY file:c4b2ca7bac06cba30b4b73c84b3eca30dd69f6c142fc330059a78c471f089aca in install_R_packages.R 711 B
24/bin/sh -c Rscript install_R_packages.R35.58 MB
25ARG DRELEASE0 B
26ADD dir:23cec3f68f8bc935fafd827c19fef981e51615dd226bb0725250736483021dae in /gatk 355.65 MB
27WORKDIR /gatk0 B
28/bin/sh -c /gatk/gradlew clean compileTestJava1003.61 MB
29WORKDIR /root0 B
30/bin/sh -c ln -sFv /gatk/build/libs/gatk.jar137 B
31/bin/sh -c java -jar gatk.jar161 B
32WORKDIR /gatk0 B
33/bin/sh -c ln -s /testdata175 B
34ENV CI=true0 B
35/bin/sh -c echo "source activate190 B
36WORKDIR /root0 B
37/bin/sh -c cp -r /root/run_unit_tests.sh190 B
38/bin/sh -c cp -r gatk.jar137 B
39/bin/sh -c cp -r install_R_packages.R706 B
40ENV DOWNLOAD_DIR=/downloads0 B
41ENV CONDA_URL=https://repo.continuum.io/miniconda/Miniconda3-4.3.30-Linux-x86_64.sh0 B
42ENV CONDA_MD5== 0b80a152332a4ce5250f3c09589c7a810 B
43ENV CONDA_PATH=/opt/miniconda0 B
44/bin/sh -c mkdir $DOWNLOAD_DIR &&129.54 MB
45ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
46WORKDIR /gatk0 B
47/bin/sh -c conda env create829.51 MB
48CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
49WORKDIR /gatk0 B
50ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

ADD file:5b334adf9d9a2256add2a801b49d4b23c93b0973ec22bb798973d571c948f102 in /