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staphb/artic:1.11.2

Index digest

sha256:a33ff450d4a9b090a9ad9e7b91ffc0c8a503a67eacaf979bdba97420f5ed0a0c

OS/ARCH

linux/amd64

Compressed size

1.8 GB

Last pushed

about 1 month by staphbadmin

Type

Image

Manifest digest

sha256:9fb157a1500ce1859f5b36022357834a2a1b0724e35e74be055a896a68ec0ad8

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.version=24.040 B
4ADD file ... in / 28.37 MB
5CMD ["/bin/bash"]0 B
6ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B
7ARG MAMBA_USER=mambauser0 B
8ARG MAMBA_USER_ID=574390 B
9ARG MAMBA_USER_GID=574390 B
10ENV MAMBA_USER=mambauser0 B
11ENV MAMBA_USER_ID=574390 B
12ENV MAMBA_USER_GID=574390 B
13ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
14ENV ENV_NAME=base0 B
15ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
16ENV MAMBA_EXE=/bin/micromamba0 B
17ENV CONDA_OVERRIDE_CUDA=0 B
18COPY /bin/micromamba /bin/micromamba # buildkit7.37 MB
19COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit103.81 KB
20COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit553 B
21COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit284 B
22RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=574393.98 KB
23USER mambauser0 B
24WORKDIR /tmp32 B
25COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit216 B
26COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit703 B
27COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit658 B
28ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
29CMD ["/bin/bash"]0 B
30COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit347 B
31SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
32ARG ARTIC_VER=1.11.20 B
33LABEL base.image=mambaorg/micromamba:2.9.0-ubuntu24.040 B
34LABEL dockerfile.version=10 B
35LABEL software=artic0 B
36LABEL software.version=1.11.20 B
37LABEL description=A bioinformatics pipeline for0 B
38LABEL website=https://github.com/artic-network/fieldbioinformatics0 B
39LABEL license=https://github.com/artic-network/fieldbioinformatics/blob/master/LICENSE0 B
40LABEL sop=https://artic.network/fieldbioinformatics/fieldbioinformatics-sop.html0 B
41LABEL maintainer=Erin Young0 B
42LABEL [email protected]0 B
43LABEL maintainer2=Raheel Ahmed0 B
44LABEL [email protected]0 B
45USER root0 B
46WORKDIR /0 B
47RUN |1 ARTIC_VER=1.11.2 /usr/local/bin/_dockerfile_shell.sh micromamba1.42 GB
48ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/artic/bin/ CONDA_PREFIX=/opt/conda/envs/artic/ LC_ALL=C.UTF-80 B
49RUN |1 ARTIC_VER=1.11.2 /usr/local/bin/_dockerfile_shell.sh artic_get_models358.57 MB
50CMD ["artic" "--help"]0 B
51WORKDIR /data32 B

Command

 ARG RELEASE