staphb/artic:1.2.4-1.12.0

Index digest

sha256:8e48733a50bedde2d33cb4fd2bdc0c846340c5ac0ba83ee369561e91bae4aff9

OS/ARCH

linux/amd64

Compressed size

2.24 GB

Last pushed

over 2 years by staphbadmin

Type

Image

Manifest digest

sha256:888d191ddb3ae760a4a38574bb2ebfb0737f762214cca13127f5af72145a71aa

Image Layers

Image Layers

1ADD file ... in / 29.96 MB

2CMD ["bash"]0 B

3ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B

4ENV ENV_NAME=base0 B

5ENV MAMBA_ROOT_PREFIX=/opt/conda0 B

6ENV MAMBA_EXE=/bin/micromamba0 B

7COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit112.52 KB

8COPY /tmp/bin/micromamba /bin/micromamba # buildkit5.44 MB

9RUN /bin/sh -c { grep32 B

10ARG MAMBA_USER=mambauser0 B

11ARG MAMBA_USER_ID=10000 B

12ARG MAMBA_USER_GID=10000 B

13ENV MAMBA_USER=mambauser0 B

14COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit524 B

15COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit285 B

16RUN |3 MAMBA_USER=mambauser MAMBA_USER_ID=1000 MAMBA_USER_GID=10004.45 KB

17USER mambauser0 B

18WORKDIR /tmp32 B

19COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit683 B

20COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit641 B

21ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B

22CMD ["/bin/bash"]0 B

23COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit345 B

24SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B

25ARG ARTIC_VER0 B

26ARG MEDAKA_VER=1.12.00 B

27LABEL base.image=mambaorg/micromamba:1.4.90 B

28LABEL dockerfile.version=10 B

29LABEL software=artic0 B

30LABEL software.version=1.2.40 B

31LABEL software1=medaka0 B

32LABEL software1.version=1.12.00 B

33LABEL description=A bioinformatics pipeline for0 B

34LABEL website=https://github.com/artic-network/fieldbioinformatics0 B

35LABEL license=https://github.com/artic-network/fieldbioinformatics/blob/master/LICENSE0 B

36LABEL sop=https://artic.network/ncov-2019/ncov2019-bioinformatics-sop.html0 B

37LABEL maintainer=Erin Young0 B

38LABEL [email protected]0 B

39USER root0 B

40WORKDIR /0 B

41RUN |2 ARTIC_VER=1.2.4 MEDAKA_VER=1.12.0 /usr/local/bin/_dockerfile_shell.sh105.21 MB

42RUN |2 ARTIC_VER=1.2.4 MEDAKA_VER=1.12.0 /usr/local/bin/_dockerfile_shell.sh774.04 MB

43ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/artic/bin/ LC_ALL=C.UTF-80 B

44RUN |2 ARTIC_VER=1.2.4 MEDAKA_VER=1.12.0 /usr/local/bin/_dockerfile_shell.sh32 B

45RUN |2 ARTIC_VER=1.2.4 MEDAKA_VER=1.12.0 /usr/local/bin/_dockerfile_shell.sh1.35 GB

46CMD ["/usr/local/bin/_dockerfile_shell.sh" "artic --help"]0 B

47WORKDIR /data32 B

Command

ADD file:2d91c2e03d02bfa16fe4f766d851b351d93d33f84751ad96c985e64ea024ec28 in /