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staphb/artic:1.8.5

Index digest

sha256:c51f57ee297f110fb66bdba518f89a93309b51ff6516f41509fbafe85292daeb

OS/ARCH

linux/amd64

Compressed size

2.51 GB

Last pushed

12 months by staphbadmin

Type

Image

Manifest digest

sha256:280c07d4e89f0c1be7b63d917711e3ebf3654fc51e6c0617814c61ddfde0c9ab

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.17 MB
6CMD ["/bin/bash"]0 B
7ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B
8ARG MAMBA_USER=mambauser0 B
9ARG MAMBA_USER_ID=574390 B
10ARG MAMBA_USER_GID=574390 B
11ENV MAMBA_USER=mambauser0 B
12ENV MAMBA_USER_ID=574390 B
13ENV MAMBA_USER_GID=574390 B
14ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
15ENV ENV_NAME=base0 B
16ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
17ENV MAMBA_EXE=/bin/micromamba0 B
18ENV CONDA_OVERRIDE_CUDA=0 B
19COPY /bin/micromamba /bin/micromamba # buildkit6.84 MB
20COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit123.59 KB
21COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit550 B
22COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit283 B
23RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=5743922.05 KB
24USER mambauser0 B
25WORKDIR /tmp32 B
26COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit686 B
27COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit658 B
28ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
29CMD ["/bin/bash"]0 B
30COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit346 B
31SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
32ARG ARTIC_VER=1.8.50 B
33LABEL base.image=mambaorg/micromamba:2.3.2-ubuntu22.040 B
34LABEL dockerfile.version=10 B
35LABEL software=artic0 B
36LABEL software.version=1.8.50 B
37LABEL description=A bioinformatics pipeline for0 B
38LABEL website=https://github.com/artic-network/fieldbioinformatics0 B
39LABEL license=https://github.com/artic-network/fieldbioinformatics/blob/master/LICENSE0 B
40LABEL sop=https://artic.network/ncov-2019/ncov2019-bioinformatics-sop.html0 B
41LABEL maintainer=Erin Young0 B
42LABEL [email protected]0 B
43USER root0 B
44WORKDIR /0 B
45RUN |1 ARTIC_VER=1.8.5 /usr/local/bin/_dockerfile_shell.sh micromamba1.18 GB
46ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/artic/bin/ CONDA_PREFIX=/opt/conda/envs/artic/ LC_ALL=C.UTF-80 B
47RUN |1 ARTIC_VER=1.8.5 /usr/local/bin/_dockerfile_shell.sh artic_get_models1.29 GB
48CMD ["artic" "--help"]0 B
49WORKDIR /data32 B

Command

 ARG RELEASE